Get started • rcompendiumtest5

library(tidyverse)
#> ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
#> ✔ dplyr     1.1.2     ✔ readr     2.1.4
#> ✔ forcats   1.0.0     ✔ stringr   1.5.0
#> ✔ ggplot2   3.4.3     ✔ tibble    3.2.1
#> ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
#> ✔ purrr     1.0.2     
#> ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
#> ✖ dplyr::filter() masks stats::filter()
#> ✖ dplyr::lag()    masks stats::lag()
#> ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors

here::here()
#> [1] "/home/runner/work/rcompendiumtest5/rcompendiumtest5"

my text

incidence plot

knitr::include_graphics(here::here("figures/02-plot_incidence.png"))

knitr::include_graphics(here::here("../figures/02-plot_incidence.png"))
#> Error in knitr::include_graphics(here::here("../figures/02-plot_incidence.png")): Cannot find the file(s): "../../figures/02-plot_incidence.png"

knitr::include_graphics("../figures/02-plot_incidence.png")

knitr::include_graphics("../../figures/02-plot_incidence.png")
#> Error in knitr::include_graphics("../../figures/02-plot_incidence.png"): Cannot find the file(s): "../../figures/02-plot_incidence.png"

read_rds(here::here("outputs/03-estimate_cfr.rds"))
#>         cfr severity_me severity_lo severity_hi
#> 1     naive   0.4615385   0.3632788   0.5620451
#> 2 corrected   0.4920000   0.3660000   0.6440000